Also the hysteresis test, you have to drop the altitude from the highest point to the midpoint at minimum 6000 fpm, if you have a VSI in the system you cant do that test without pinning it unless you can isolate it (which you cant.)
Then theres the matter of performing adjustments if required (most of the time) on the altimeter. The altimeter needs a bit of disassembly and has to be manipulated, cant do that while on the panel.
I don't understand why you can't isolate the VSI and do an altimeter case-leak check in the aircraft. In fact you can do the whole 24-month inspection in the aircraft but can't do the whole thing by removing all the components and sending them to a shop.
Shops who sign-out the individual components don't necessarily have them signed out by AME's and your 24-month inspection is required to be signed out in the journey log by an AME working under an appropriately rated AMO...no way around that.
Also, you can in fact adjust the altimeter in the aircraft by adjusting the baro scale but you technically have to have an instrument rating on your AMO to do that.
You also have to test the Transponder in the aircraft after being re-installed - frequency, output power, sensitivity etc. - and you need a rated AME and the proper calibrated test equipment to do that.
Coax cables and antennas will almost always change these parameters that have been recorded on the bench.
You should never have rigid tubing going directly to the instruments IMO. Most instrument panels are shock mounted and the vibration inevitably causes leaks. The plastic tubing throughout really is the cheapest and the best to work with.
...and just an add...a lot of GA aircraft static leaks can be chased to the ASI case. The gasket behind the glass dries out and cracks and of course can't be field repaired.